These are the collections of things that I beleived useful in my daily researh work.
Training
- [NYUNY/NYUAD Bioinformatics training resource] (https://learn.gencore.bio.nyu.edu/)
- Single-cell RNA-seq analysis with Scanpy (https://learn.gencore.bio.nyu.edu/transcriptomics/single_cell_rna_seq.html)
- Babraham Bioinformatics
- Bioinformatics Training at the Harvard Chan Bioinformatics Core
- HarvardX Biomedical Data Science Open Online Training - rafalab
- Research Informatics Training - University of Cambbridge
- National cancer institute GDC documentation
- Bioinformatics for Biologists
- National Cancer Institute: Bioinformatics Training & Education Program
Userful Reource
http://rafalab.dfci.harvard.edu/ - Development of statistical tools
https://liulab-dfci.github.io/ - Computational methods for the design (SSC), analysis (MAGeCK), hit prioritization (NEST), and visualization (VISPR) of genome-wide CRISPR screens
https://www.jax.org - Leading the research for tomorrow’s cures
https://www.snijderlab.org/ - Use systems biology to discover things about cells.
https://zlab.bio/ - Zhang Feng Biological Discovery & Engineering
https://www.ciccialab.com/ - Genome Integrity and Genome Editing
https://sizunjianglab.com - Investigate host-disease interaction
https://hostmicrobe.org/ - Study the biological basis of diseases caused by microbes
https://cheesemanlab.wi.mit.edu/ - World of cell division
https://blainey.mit.edu/ - Pooled optical genetic screening in human cells
https://marsonlab.org/ - Decoding and rewriting human immune cells with CRISPR
Biology
- Bioinformatics Notebook
- Another Book on Data Science- Learn R and Python in Parallel
- Bioinformatics at COMAV
- Next-Generation Sequencing Analysis Resources -NGS analysis, concepts
- High dimensional statistics with R Introduction to high-dimensional data
- STATQUEST!!!
- Protocols - Beiting Lab
- Bioturing
- iBiology - Bringing the world’s best biology to you, for free!
- Sequence Variant Nomenclature
- Encyclopedia Britannica
- Labpedia.net
- The bumbling chemist
- ToxTutor
Databases
COSMIC - Catalogue Of Somatic Mutations In Cancer, is the world’s largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. dbSNP - NCBI database of single nucleotide polymorphisms (SNPs) and multiple small-scale variations that include insertions/deletions, microsatellites, and non-polymorphic variants. 1000 Genomes Project - a deep catalog of human genetic variation. gnomAD - Genome Aggregation Database. ClinVar - a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. VarSome - search engine for human genomic variants OncoKB - precision oncology knowledge base Ensembl - genome browser for vertebrate genomes cBioPortal - provides visualization, analysis NCBI - National Center for Biotechnology Information UCSC Genome Browser - an online, interactive tool for the display and analysis of genomic data.