Wiki

These are the collections of things that I beleived useful in my daily researh work.

Computational biology

• Next-Generation Sequencing Analysis Resources
• Introduction to Bioinformatics workflows with Nextflow and nf-core
• National cancer institute GDC documentation

To be a biologist

• Bioturing
• iBiology - Bringing the world’s best biology to you, for free!
• Sequence Variant Nomenclature
• Encyclopedia Britannica
• Labpedia.net
• The bumbling chemist
• ToxTutor

Researh Labs

• https://www.jax.org - Leading the research for tomorrow’s cures
• https://www.snijderlab.org/ - Use systems biology to discover things about cells.
• https://zlab.bio/ - Zhang Feng Biological Discovery & Engineering
• https://www.ciccialab.com/ - Genome Integrity and Genome Editing
• https://sizunjianglab.com - Investigate host-disease interaction
• http://rafalab.dfci.harvard.edu/ - Development of statistical tools
• https://hostmicrobe.org/ - Study the biological basis of diseases caused by microbes
• https://cheesemanlab.wi.mit.edu/ - World of cell division
• https://blainey.mit.edu/ - Pooled optical genetic screening in human cells
• https://marsonlab.org/ - Decoding and rewriting human immune cells with CRISPR
• https://liulab-dfci.github.io/ - Computational methods for the design (SSC), analysis (MAGeCK), hit prioritization (NEST), and visualization (VISPR) of genome-wide CRISPR screens
• Statistical Bioinformatics Lab

Research Proposal

• NMRC | Open Fund - Young Individual Research Grant
• Funding Opportunities - Abramson Cancer Center | Penn Medicine
• Write Your Research Plan

Paper writting

• The underappreciated art of creating publication-quality figures

Useful Tools

• DIY.transcriptomics
• ProteinPaint
• Hiplot
• Free Icons and Stickers
• Bootstrap Icons
• Blood PBMCs
• distill

Learning R

• An Introduction to Statistical Learning
• R for Data Science (2e)
• R Graphics Cookbook, 2nd edition
• Advanced R
• ggplot2: Elegant Graphics for Data Analysis
• The Epidemiologist R Handbook
• Modern Statistics for Modern Biology
• Data Analysis and Prediction Algorithms with R
• Bioinformatics Training & Education Program
• Saving R Graphics across OSs
• Tutorial on Advanced Stats and Machine Learning with R
• Publication ready plots using ggpubr
• datanovia
• Data Analysis in Genome Biology
• Data Viz with Python and R

Bioinformatics Training

• Bioinformatics for Biologists
• National Cancer Institute: Bioinformatics Training & Education Program
• High dimensional statistics with R Introduction to high-dimensional data
• Bioinformatics Training at the Harvard Chan Bioinformatics Core

Nice Blogs

• https://www.andrewheiss.com/blog/
• https://www.andreashandel.com/
• https://renkun.me/
• https://morphoscape.wordpress.com/category/tech/
• https://albert-rapp.de/
• https://jokergoo.github.io/
• <>

Books

• R for Data science
• R Graphics Cookbook, 2nd edition
• ggplot2: Elegant Graphics for Data Analysis
• Modern Statistics for Modern Biology
• An Introduction to Statistical Learning
• Functional Programming
• The Epidemiologist R Handbook
• Data Analysis and Prediction Algorithms with R
• Data Analysis in Genome Biology
• PH525x series - Biomedical Data Science