Conda

Last updated

September 9, 2020

Modified

June 16, 2025

Conda

#| eval: false

# Init
conda init --all

# Use mamba for faster solving
conda update -n base conda
conda install -n base conda-libmamba-solver

# Config
conda config --set solver libmamba
conda config --set always_yes true
conda config --set auto_activate_base false

# Setup channels
conda config --add channels bioconda
conda config --add channels conda-forge
#conda config --set channel_priority strict

# Install software from a specific channle
conda install -c conda-forge numpy

# Create R environment
conda create -n renv r-4.3 r-languageserver r-tidyverse r-irkernel r-httpgd

conda install conda-forge::r-qs       
# Remove a specific environment
conda remove --name my_env --all

# Remove a software in a environment
conda remove --name my_env package_name

# Export and save the conda env file with all software information
conda env export -n renv > renv.yml
conda env create -f renv.yml